Perfectly chewy gluten-free bagels made from scratch at home. Customize them with your favorite toppings! Store leftovers in the freezer for quick homemade bagels.
This post is sponsored by Bob’s Red Mill, a long-term partner of Snixy Kitchen
We've been getting almost all of our groceries delivered these past several months. While I miss browsing the aisles at the supermarket, it certainly saves us time. As an added bonus, it's also a constant source of entertainment when we discover what substitutions were made to our order. As a food blogger, my orders are often long with very specific ingredients.
A few weeks ago, I ordered two blocks of cream cheese to make cheesecake. They substituted two tubs of whipped cream cheese spread. Cheesecake wasn't happening. Instead, I needed bagels.
Gluten-Free Bagel Recipe
Between my gluten-free soft pretzels, gluten-free pizza, and gluten-free sourdough exploits, I was confident I could turn my assortment of Bob's Red Mill flours into gluten-free bagels from scratch. At least edible enough bagels to get me through a pound of whipped cream cheese.
They turned out so incredible though that I made them 4x in a week and went to bed each night giddy about waking up to fresh homemade gf bagels the next morning.
With the recipe finally exactly right, these gluten-free bagles are the third recipe in a year-long partnership with Bob’s Red Mill. Here’s a list of all the recipes I’ve made in partnership with Bob’s Red Mill over the years.
Are Bagels Gluten-Free?
It's difficult to find a gluten-free bakery bagel. While there are a few decent store-bought gluten-free bagels, nothing beats a bakery-fresh bagel. One that's hearty and chewy and baked up that morning.
These bagels use an assortment of gluten-free flours and starches for the dough and, like a true New York-style bagel, they get boiled before baking to give them a flavor and texture similar to their glutinous counterparts.
Best Gluten-Free Bagels
These homemade gluten-free bagels have a thick crust with a super chewy interior. When toasted, it crunches just a bit before giving way to a dense chewy center, the way a good bagel should.
Let's look at the ingredients that go into a gluten-free bagel, along with substitution recommendations. I use all Bob's Red Mill flours in this recipe which is consistent in quality. All measurements have been formulated accounting for the specific grind of their flours, so sticking with Bob’s Red Mill flours will provide the best gluten-free bagels.
Brown Rice Flour
This recipe uses brown rice flour coupled with sorghum flour for the whole grain component. Brown rice flour is a great neutral whole grain flour for bread because it bakes up neither gummy nor gritty and it soaks up the moisture nicely. I've tried baking sourdough loaves without brown rice flour and none of them get the texture quite right, so when I turned to bagel-making, I pulled on that sourdough experience and started with brown rice flour.
Sorghum Flour
I've paired the brown rice flour with sorghum flour to add more nutrients and flavor. Sorghum is wholesome and whole grain that has slightly sweet notes that add flavor depth. I tested a version with oat flour in place of sorghum and the results were too fluffy. The bagels didn't have quite as nice a texture.
Tapioca Flour and Potato Starch
For starches, I've used a combination of tapioca flour and potato starch. If you've made a few of my recipes, you'll know tapioca flour is one of my most-used flours. It's a fluffy starch that adds chewiness to baked goods. Just like when baking sourdough, I found that combining the tapioca flour with potato starch produced a more flavorful bagel.
The texture of the all tapioca flour tests were very similar, however, so if you don't have potato starch, you can substitute tapioca flour in its place, but the results won't be quite as flavorful.
Psyllium Seed Husks
These bagels use psyllium seed husks instead of xanthan gum as the binder. I often get asked about substitutions for xanthan gum due to sensitivities, so for these gluten-free bagels, I started with what I know works for gluten-free sourdough bread: psyllium seed husks. The psyllium seed husks soak up moisture and, in doing so, bind the flours together, adding chewiness that mimics gluten. It's also the secret ingredient that binds this cinnamon raisin seed and nut bread together.
Apple Cider Vinegar
Just like in my gluten-free pizza dough recipe, the apple cider vinegar in the dough will help to strengthen it and slightly increases the acidity. This allows the yeast to grow easier, causing your bagels to rise a bit better.
How to Make Gluten-Free Vegan Bagels
Mixing the dough
The first step to making gluten-free bagels is to mix all the flours together well in a stand mixer before adding the wet ingredients. Add the wet ingredients, kneading using a dough hook. Alternatively, you could mix it by hand with a rubber spatula, then knead it together by hand. At first, the dough will seem as though it's too moist, but as it sits for a few minutes, the psyllium seed husks will soak up the moisture, turning it into a thick dense dough. Knead this dough by hand for a few minutes before dividing it into 8 pieces.
How to Shape Gluten-Free Bagels
To shape the bagels, roll each piece into a smooth ball with the palm of your hand. If you notice the dough feels very dense or even a bit dry on the outside, wet your hands just a bit and knead the water into the dough ball with your hands. Once in a smooth ball, use your thumb and index finger to pinch a hole in the middle of the ball, expanding it to about ¾ to 1-inch large using your fingers.
I make my bagels on the smaller side because these hearty gluten-free bagels are very filling. If you prefer a bigger bagel, make just 6 and increase the baking time a few minutes.
Resting and rising
When making gluten-free yeasted dough, you want to encourage trapping as much air into the rise as possible. For that reason, we shape the bagels before the rise so we don't disturb that beautiful rise later. Let them rise, covered, for 60-90 minutes in a warm place (I use the proof setting on my oven).
Water Bath
Don't skip this step. Just before the bagels are done rising, prepare a boiling water bath with honey. This gives them that brown sheet and thickens the crust, giving it the classic bagel chewiness. While the oven preheats, boil the bagels in batches for just 1 minute per side. Transfer boiled bagels back to a parchment-lined baking sheet.
Egg White Brush & Toppings
Brushing the boiled bagels with egg whites does two things. First, it enhances the browning of the crust even further. It also helps the toppings stick to the bagels. Sesame bagels are my favorite, but you could do poppy seed, everything seasoning, onion granules, or whatever else your heart desires!
For a vegan version, you can skip the egg white brush and brush with melted plant butter instead.
Bake
Now they bake and you drink your matcha latte, waiting patiently. They'll brown up and if you tap on them they'll seem very hard, but they crust will soften almost immediately as they cool.
Storing Homemade Bagels
Just like bagels you'd get at a bakery, these gluten-free bagels are best eaten the day they're baked. Fresh bagels are great warm and untoasted after resting for about 20 minutes fresh from the oven.
If eating the gf bagels after they've cooled completely or the next day, they're best toasted before topping with your favorite spread.
Store bagels in an airtight container for up to two days. For any bagels that you won't eat within 2 days, slice and freeze them as soon as they cool. Pop frozen bagels in the toaster to defrost and refreshen the texture.
GLUTEN-FREE DOUGH RECIPES
- Gluten-Free Soft Pretzels
- Gluten-Free Pizza Dough
- Fluffy Gluten-Free Biscuits
- Gluten-Free Dumpling Wrappers
- Gluten-Free Cassava Flour Tortillas
- Gluten-Free Almond Flour Pasta
Gluten-Free Bagels
Perfectly chewy gluten-free bagels made from scratch at home! These yeasted bagels are so good, you can't tell they're gluten-free. Top with sesame seeds, everything seasoning, or your other favorite toppings.
Ingredients
Gluten-Free Bagels
- 325g (1¼ cup + 2 tablespoons) warm water (105-110°F)
- 2¼ teaspoons Bob's Red Mill active dry yeast
- 1 tablespoon granulated sugar
- 160g (1 cup) Bob's Red Mill brown rice flour
- 100g (¾ cup + 2 tablespoons) Bob's Red Mill tapioca starch/flour
- 100g (½ cup + 2 tablespoons) Bob's Red Mill potato starch (different than potato flour - see note)
- 100g (¾ cup + ½ tablespoon) Bob's Red Mill sorghum flour
- 20g (¼ cup) psyllium seed husks (I use whole flakes)
- 2 teaspoons kosher salt
- 1 teaspoon baking powder
- 1 tablespoon apple cider vinegar
- ½ tablespoon extra virgin olive oil
- For egg wash: 1 egg white beaten with 1 tablespoon water
- Optional toppings: sesame seeds, dried minced onion, everything seasoning, poppy seeds, etc.
Poaching water
- 2 quarts water
- 2 tablespoons honey or maple syrup
Instructions
- Warm the water on the stove or microwave between 105-115°F (if you go over, just let it cool until the temperature is in that range so you don't kill the yeast). Transfer to a wide medium bowl and mix in the sugar. Slowly sprinkle the yeast over the warm water. Let sit for 10 minutes while the yeast activates and foams. If the yeast hasn't gotten foamy by 10 minutes, the yeast may not be fresh, so try again with a new package.
- Meanwhile, combine the brown rice flour, tapioca starch, potato starch, sorghum flour, psyllium seed husk, salt, and baking powder in the bowl of a stand mixer with the dough hook attachment or a large mixing bowl. When the yeast/water mixture is ready, add it to the flour along with the olive oil and vinegar and mix on low to combine. Increase speed to medium and knead for 4-5 minutes until the dough is super smooth and pulls away from the edges a bit. (If using a mixing bowl, mix with a wooden spoon until it's thick, then knead with your hands until it forms a smooth ball). At first, it will seem very moist, but the psyllium will soak up the water after a few minutes.
- Divide the dough into 8 equal pieces. Knead and roll each piece into a ball and use your thumb and index finger to pinch a whole in the center. Place on a parchment-lined baking sheet and repeat with remaining dough, placing them at least 2 inches apart. If the dough feels too firm or starts to dry/crack as you roll, either knead in a tiny bit more water or dampen your hands as you knead and roll out a new bagel. When finished with all 8 bagels, cover the baking sheet with plastic wrap and let rise in a warm spot for 90 minutes.
- When they're done rising, bring a large pot of 2 quarts of water plus honey to boil and preheat the oven to 425°F. Whisk together the egg white and water and set aside with a pastry brush and have your desired toppings in a separate bowl.
- Working in batches of 2-3 bagels, use a slotted spoon or spatula to drop a bagel into the boiling water. Boil for 1 minute, flip each bagel and boil for another minute. Transfer bagels back to the parchment-lined baking sheet, tapping lightly on the edge of the pot to get rid of extra water. repeat until you've boiled all the bagels.
- Brush each bagel with egg wash all over the exposed surfaces and sprinkle with your desired toppings. Bake on the middle rack for 30-35 minutes until the bagels are golden brown and firm to the touch (if they seem very hard, don't worry, they'll soften up almost instantly as they cool). Let cool completely before slicing and serving.
- Store bagels in an airtight container for two days. Slice and freeze any bagels you won't eat within 2 days. Fresh bagels are great untoasted, but if eating them the next day or out of the freezer, they're best lightly toasted.
Notes
Potato Starch: Potato starch is different than potato flour (meanwhile, tapioca starch and tapioca flour are the same in the US). You can substitute the potato starch with more tapioca flour/starch if you'd like. The results are less flavorful than the version with potato starch, but similar in texture! You won't be disappointed.
Size: I make my bagels on the smaller side because these hearty gluten-free bagels are very filling. If you prefer a bigger bagel, make just 6 and increase the baking time a few minutes.
Nutrition Information:
Yield: 8 Serving Size: 1Amount Per Serving: Calories: 168Total Fat: 4gSaturated Fat: 1gTrans Fat: 0gUnsaturated Fat: 3gCholesterol: 23mgSodium: 673mgCarbohydrates: 31gFiber: 2gSugar: 9gProtein: 4g
Sara shah -
I’m excited to try these! Can I used a superfine psyllium husk powder instead of whole flake? Thank you!
Barb -
What can be substituted for the sorghum?
Sarah Menanix -
I tested a version with 80g oat flour in place of the sorghum flour (it needed less than the sorghum) – they were yummy, but a bit fluffier so not my preferred texture. In a pinch, it’ll still make yummy bagels! I also tried a version with half sorghum and half buckwheat, so I think you could prob try subbing in the same weight in buckwheat (100g). Also, this comes with the caveat that I only tested the oat version once and I haven’t tested a full buckwheat version :) This is just what I would do if I couldn't use sorghum!
Sarah Menanix -
I know we e-mailed about this, but just wanted to put the answer here in case someone else had the question: A friend of mine made the bagels and, for my research, she split the dough and used superfine psyllium powder in half and whole psyllium husk flakes for the other half (subbing by weight). She said the dough was almost the same and the results were very very similar, but the superfine psyllium powder ones seemed ever so slightly denser. That being said, if you've only got superfine psyllium powder, then it will work!
Sarah Menanix -
Thank you for catching that! I've updated the recipe card.
sarah Lewkowicz -
I made the recipe today. Wow! They are perfect. Easy to work with this dough and all the steps were fun and well explained. You might want to clarify that Potato flour ( made from whole potatoes) is not the same as potato starch, which is what your recipe calls for. We had them with cream cheese, lox and sliced shallots. Wonderful
Sarah Menanix -
Yay! I'm so glad you loved them! That sounds like the perfect Saturday morning breakfast! Good idea - I'll add that note above! So many gluten-free flours, I can totally understand why someone might get mixed up!
Chelsea -
Not sure what happened here because I needed to add almost two cups additional water to make this work... Did I add too much tapioca flour? It says 3/4 plus 2 tbsp.. I had to assume that meant 3/4 c + 2 tbsp like the others in the list, or you would have put 2 3/4 tbsp. Not sure what else could have gone wrong??
Sarah Menanix -
Oh no! You're correct, it was supposed to say 3/4 cup + 2 tablespoons - thanks for catching that typo! I'd love to troubleshoot what went wrong. My inkling is that it has to do with the brands of flour you use. Did you use all Bob's Red Mill brand flours? Did you measure by weight? I have noticed, for example, that different brands of brown rice flour soak up water significantly more/less (to the tune of cups even!). I make these weekly now and had this recipe tested by another baker, who tested with whole psyllium flakes and psyllium powder, so both of those should work. I'm trying to think of other variables that could have caused them to be more dry for you...
Chelsea -
Thanks so much for a quick response! I used different brands, and now that I look closer I used tapioca starch and potato flour LOL. I used the measurements by cup as I don’t have a scale, and Psyllium husk powder :) they’re about to go in the water bath- trying it anyway! :) Sounds like others are having great results though so I’ll definitely give it another shot!
Sarah Menanix -
Ah-ha! Tapioca starch is the same as tapioca flour, but - and this is just confusing - potato starch and potato flour are very different. I'll include a note to make sure people look for potato starch!
Sarah Menanix -
One more guess: Another friend said she almost accidentally used potato flour instead of potato starch - just in case you may have also done the same!
Megan -
I made these with millet replacing the sorghum flour. They turned out a bit flat (more like bagel thins than fluffy NY style bagels) but taste great!
Jane S. -
Oops thought I had sorghum powder but don’t and I’m already in the middle 😬 what can I sub?
Sarah Menanix -
I tested a version with 80g oat flour in place of the sorghum flour (it needed less) - they were yummy, but a bit fluffier so not my preferred texture. In a pinch, it'll still make yummy bagels! I also tried a version with half sorghum and half buckwheat, so I think you could prob try subbing in the same weight in buckwheat (100g).
Sarah Menanix -
Also, this comes with the caveat that I only tested the oat version once and I haven't tested a full buckwheat version :) This is just what I would do if I found myself out of sorghum flour in the middle of baking!
Julie Feldkamp -
There is no milk in this recipe. Not sure what you are talking about but I used dry active yeast and they came out fine. Still did it in the water for ten minutes till it got foamy like the recipe
Sarah Menanix -
Whoops - I got confused because I'd just made my pizza crust and I dissolve the yeast in milk for that. You're correct :)
Janette -
Hi Jane! Just curious if you tried this recipe with the full buckwheat substitution?
Tee F. -
I just made these bagels today and I prepared myself for another let down BUT these bagels were fantastic!!! Chewy and moist not gummy. I made everything bagels and they were tasty 😁. Sarah, any suggestions on how to get more of the everything seasoning inside the bagel? Thanks!
Sarah Menanix -
Yay! That makes me so happy - thank you for coming back to share! Ooo - that's a good question. Do you mean like in the dough? I bet you could just add some of the everything seasoning to the flour and mix it right into the dough - it shouldn't change how it bakes up at all!
Tee F -
Awesomeness!!! Can't wait to try cinnamon apple and other flavors. Bagels are back in my life woo hoo!
Megan H -
I would love a video! I am making these now, and the flour was super dry from the first mix; I added about 1/4 cup more water and used a mister bottle with water while I kneaded and shaped them. My dough did not want to hold together at all! I fought them into bagel shapes, but they are not smooth and pretty. I almost wanted to add more oil. Will see what happens when they come out of the rise. I used Bob's brown rice flour, and swapped corn starch for the potato starch. Next time I will weigh instead of cup measure. I'm hoping if they look ugly I can hide it with poppy seeds.
Sarah Menanix -
Hm - I've never tested it with corn starch in place of the potato starch, but given how you described it, it sounds like the corn starch soaked up much more liquid. As far as flour, corn starch tends to be more brittle than chewy, whereas tapioca and potato starch are much chewier/fluffier (this is why corn starch makes a good flour for dredging fried foods, whereas tapioca/potato starch would be gummier when fried). Tapioca and potato starch, here, act as the binders, adding chewiness. This seems in line with how you're describing the texture when you subbed in corn starch. I have a feeling you'll find that the corn starch version won't be very chewy/fluffy when baked.
In the notes, I recommend replacing the potato starch with more tapioca starch if you need to substitute the potato starch, as they behave similarly in baked goods.
Megan H -
Ah, good to know. I used tapioca, and almost subbed arrowroot for the potato, but your comment about less flavorful led me to the corn starch. Will do more tapioca next time, then. Thank you
Sarah Menanix -
Also, here's a behind-the-scenes video of making them on my instagram reels!
Making the dough
Boiling and Baking
Megan H -
Thanks for the videos! My bagels aren't beautiful like yours, but they are super delicious! They have a soft chewy interior and the slightest tang of sourdough. I'm almost afraid to make them correctly, ha ha!
I used a home-made non-dairy cultured cream cheese with them, and it was fantastic. Thank you for this recipe!
Janet -
Hi there. Can’t wait to try. Any thoughts on adding a brown rice sourdough starter to the mix?
Dave M -
My wife and I are so happy right now!! Haven't had bagels in years and these are phenomenal. I added green chiles to part of the batch and spread goat cheese on them. So good... Thank you for the great recipe!
Bruria -
Hi! I’m so excited to make these, the recipe looks just right! I managed to find all the ingredients in high quality, but we don’t have active dry yeast in my country, only instant dry yeast. Is there a way to safely substitute? This will be my first time baking gluten-free with yeast, so I’m pretty anxious.
Sarah Menanix -
While I haven't tried it, I saw online that 2 1/4 teaspoons active dry yeast = 1 2/3 teaspoons instant yeast. You also don't need to proof the yeast in advance in the water, just add it directly to the dry ingredients, but still warm the water as instructed!
Bruria -
Thanks! I hope it works well!
Julie Feldkamp -
Love this recipe but they came out very dry and I added another 1/2 cup of water to make the dough the proper consistency. Otherwise they were AMAZING So glad I found this recipe, Gluten free baking can be so hit or miss and I am glad to find a tried and true recipe that worked exactly as it should!! Thank you for this I look forward to trying other recipes of yours!!!!!!
Nomi -
Thank you so much! I could not find psyllium husk or powder. Can I use milled flaxseed instead? Or something else?
Sarah Menanix -
Hmm - I'm not sure if that would offer the desired stickiness/chewiness. I've not tested that so I am not sure. You could try subbing in 1.5 teaspoons xanthan gum and reducing the water. I would probably start with just 1 cup of water if going that route.
If looking in the grocery store, often the psyllium can be found with the supplements, if not in the baking/gluten-free section. Depending on where you're located, I get the 365 brand from Whole Foods.
Ayah -
I tried this with oat flour instead of rice and tapioca flour instead of potato flour and it turned out great. I absolutely love this recipe. My family can't get enough of the bagels. Thank you!!
Shirley L Martin -
Would love to make these for my husband who has celiac disease...but he is highly allergic to psyllium. Is there a way to substitute xanthan gum, and if so, how much?
Sarah Menanix -
Oh no! I've not tested without the psyllium (especially because it adds the chewiness classic to bagels). You could try subbing in 1.5 teaspoons xanthan gum and reducing the water. I would probably start with just 1 cup of water if going that route.
Mel -
Excited to make these! Can I make them the night before and pop them in the fridge overnight either before or after the rise?
Jasmine -
I'm interested in making these as mini bagels, how long would you suggest I boil/bake them?
Thank you for including the weights of the ingredients
Sarah Menanix -
I haven't tried mini ones, but I would boil them the same amount of time, but bake them for less. You'll want them to be golden brown, so maybe start at 22 minutes?
Wednesday N Sorokin -
Thank you so much! These are the best gf bagels I've made so far and I've tried a lot of recipes. The only changes I made were that I used honey instead of sugar and in the poaching liquid I used 1 tsp. of molasses instead of the honey.
Monika -
Hi! I have made the recipe 3 times and my husband and I LOVE it! Thank you for sharing! I have an observation though. I have used my kitchen scale for everything except the water the first time and the 1 1/4+2 tbsp was not enough. I had to add more when I was mixing. The other two times I decided to weigh the 325 g and it was closer to 2 cups.
Sarah Menanix -
Interesting! I wonder if it's possible your liquid measuring cup is a bit off - I mention this because I have had two that I had to throw out because they were incorrect and it took me a couple of years before I realized it! A cup of water should weigh 236g, so 326g should be 1.3777 cups.
In any case, I'm glad you loved them!
Monika -
Good to know!!!! Let me try another set I have! Thanks!
Lilen -
Thank you for the recipe! I'm going to try it next weekend. I just have a question, do not use xanthan gum?
Sarah Menanix -
These bagels use psyllium seed husks instead of xanthan gum as the binder. I hope you love them!
Linda -
Howdy I made these twice yesterday and sadly I made bagel thins. I love bagel thins but I am going to love these when I get them looking llike yours. I was wondering if I over proofed them ? First batch 60 minutes and the 2cd for 90 minutes. They flatten out while rising. Any suggestions. Thank you linda
Sarah Menanix -
I'm so sorry you had this issue. It sounds to me like your bagels possibly have too much moisture in them. I'm happy to help you troubleshoot. I'm wondering - what brand of flour do you use? Also, what brand of psyllium seed husks do you use? Did you measure everything by weight? When you add activate the yeast in the water, does it foam and bubble up?
Linda -
Hi thanks for your time ! I used bob's flours. Weighed everything except the water. I used 2 1/4 teas. Instant yeast mixed with flours. I did use yerba prima psyllium husk powder .( maybe different from husks ? ) Are measurements for rapid rise yeast and instant yeast different ? Thanks again. Ps the bagel thins are still delicious !
Sarah Menanix -
Hm - I'm not sure about the yerba prima psyllium husk powder because I've not used that brand before - I tend to use the 365 whole foods brand, but I just looked it up and I don't *think* that would cause the issue. It's possible that it's the yeast that was the issue - part of the reason I tend to gravitate to active dry yeast is that you proof them before adding them to the dough so you know if the yeast is good. I would recommend trying again with active dry yeast to make sure that outdated or not fresh yeast isn't the issue.
giulianna -
Is it possible to make these with a sourdough starter? If so, what do you recommend?
Inna -
Yes!!! I just made them today with a sourdough starter and they turned our pure perfection! I used around 100 grams of sourdough discard, I added it into water and then added it to the flour mix. I let them rise for 2.5-3 hours and oh my, they so were good! Highly recommend.