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    Home / Recipes / Gluten-Free

    Baked gluten-free mac and cheese with cauliflower

    Modified: Mar 18, 2025 · Published: July 5, 2018 by Sarah Menanix · This post may contain affiliate links

    4.70 from 10 reviews

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    The Best Gluten-Free Mac and Cheese

    This is the BEST Baked Gluten-Free Mac and Cheese. Plus, this easy gluten-free mac and cheese comes together so quickly! Toss everything together in a big bowl, dump into a baking pan, & bake until crispy on top. Plus you can easily hide seasonal veggies in it - from cauliflower to squash.

    Baked Gluten-Free Mac and Cheese

    You all keeping cool for the 4th of July weekend? We ditched city life and the convenient cell phone service & wifi that comes with it to escape with my parents to their woodsy lake cabin for a long relaxing weekend. As nice as it feels to disconnect from the outside world for a few days, we weren't prepared, and after 36 hours, we find ourselves enjoying an iced tea and the free wifi at the Peninsula Market.

    We definitely need more practice in leaving the hustle and bustle of city life behind. You know you've got a problem when you run your phone battery down while searching for one burst of service so you can load your Instagram feed.

    Lake Almanor

    I'm trying my hardest to channel my inner country girl who grew up camping, fishing, and throwing muddy tea parties on the beach. That tow-headed blonde girl spent every daylight hour running around on the beach, and wore a dark tan without ever getting a sunburn despite swearing off sunscreen. She spent hours snorkeling stomach-down on an inner tube hunting for lost lures along the beach, gutted her own fish, and almost always had a scrape on her knee.

    This grown-up city girl got a splotchy sunburn after 4 hours wearing SPF 50 under an umbrella. We spent the afternoon on the beach with the family, taking turns spinning circles on the WaveRunner between constant snack breaks, with a fishing line in the water just in case something bites. Tonight we'll grill up bass tacos with my aunt, uncle, and my cousin Alex - the one who taught me how to build rock forts in the woods, while I brought along my pink plastic tea set and showed his Ninja Turtle action figures a proper party.

    Cauliflower Mac and Cheese

    The Best Gluten-Free Mac and Cheese

    Gluten-Free Mac and Cheese Recipe

    What's the best side dish for a 4th of July grill-out? This vegetable-filled gluten-free mac and cheese (and maybe this perfect potluck potato salad). On the back of our wedding RSVP cards, we asked our guests to "share a favorite family recipe." My gal Lana Shea sent us her recipe for "THE BEST EVER MAC AND CHEESE!!!" that she later made for my bachelorette slumber party with a dozen of my closest girlfriends. Lana doesn't lie; this gluten-free mac and cheese recipe is perfect in every way. I'd say a year later is about the right time to start sharing some of these tried-and-true recipes, right?

    Baked Cauliflower Mac and Cheese

    Cauliflower Mac and Cheese

    Cauliflower is the perfect vegetable to hide in mac and cheese! When our next door neighbors had a baby, I knew just the dish to bring over. Since I'm a sneaky sneaky cook, I hid some shredded squash and grated cauliflower in the dish to slip some veggies to their 3 year-old daughter. And she was none the wiser.

    Hiding among the cheese, the yellow squash and cauliflower add only a slightly noticeable flavor boost, while bumping up the veggies tenfold.

    In the fall/winter, I grate up a raw butternut squash in place of the yellow squash and bake that into it instead!

    Gluten-Free Mac and Cheese Baked

    Easy Gluten-Free Mac and Cheese Baked

    This easy gluten-free mac and cheese comes together so quickly! Just toss everything together in a big bowl, dump into a baking pan and bake! 

    Sharp cheddar mixed with sour cream and cottage cheese give this casserole a hearty texture with bursts of cheese. The melted cheese on top add a crispy layer that give every bite of this baked mac and cheese substance.

    Prepare to field several recipe requests every time you make it. With this baked cauliflower macaroni and cheese, you'll never need another mac and cheese recipe again. Pinky promise.

    Easy Gluten-Free Mac and Cheese

    What are the best cheeses for macaroni and cheese?

    For baked mac and cheese, sharp cheddar cheese from Tillamook is the best choice. For stovetop creamy mac and cheese, a blend of sharp cheddar, gruyere, parmesan, and/or goat cheese work well together. 

    When my friend Lana gave me this recipe, she specifically wrote "Tillamook cheddar" in the ingredients. I asked her about it and she assured me that Tillamook would do. I've since made this recipe over 100 times - I make it for every family holiday from 4th of July to Thanksgiving - and I agree: Tillamook sharp cheddar is THE BEST cheese for baked mac and cheese. 

    Smoked Cheddar Mac and Cheese

    I've also made this recipe using a combination of Tillamook sharp white cheddar and smoked medium cheddar, adding in a bit of smoked paprika and bacon breadcrumbs. You can get the recipe for that smoked cheddar mac and cheese here!

    Recipe

    Cauliflower Mac & Cheese

    Baked cauliflower macaroni and cheese

    prep time: 15 minutes mins
    cook time: 35 minutes mins
    total time: 50 minutes mins
    This is the BEST Baked Gluten-Free Mac and Cheese. Plus, this easy gluten-free mac and cheese comes together so quickly! Toss everything together in a big bowl, dump into a baking pan, & bake until crispy on top. Plus you can easily hide seasonal veggies in it - from cauliflower to squash.
    4.70 from 10 reviews
    PRINT PIN SAVESaved!

    Ingredients

    • 1 lb gluten-free macaroni or your favorite macaroni, I use Bionaturae elbows
    • 1-½ lbs Tillamook sharp cheddar cheese, shredded & divided (I've made this with other brands, but Tillamook is always the best flavor)
    • 8 ounces cottage cheese
    • 8 ounces sour cream
    • ½ head of cauliflower, finely chopped (I just send mine through the grater of the food processor)
    • 3 yellow squash or 1-2 small zucchini, shredded (*See Note)
    • 1 teaspoon paprika
    • ¼ teaspoon cayenne pepper
    • Salt & pepper, to taste
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    INSTRUCTIONS

    • Preheat the oven to 350°F
    • Cook the macaroni according to the directions, under cooking it just slightly. Gluten-free mac and cheese can over cook REALLY fast, so as soon as it is al-dente, drain it.
    • While the macaroni cooks, mix the rest of the ingredients together in a large bowl, reserving 1-½ cups of grated cheddar cheese.
    • Drain the macaroni and add it to the large cheese bowl. Mix until well-combined.
    • Pour the macaroni into a 9x12 glass baking dish.
    • Sprinkle the reserved grated cheddar cheese over the top.
    • Bake for 25-30 minutes. Turn on the broiler and broil for 6-9 more minutes until the top turns brown and crispy.

    Notes

    *For a fall/winter variation, I replace the summer squash with raw grated butternut squash and it works great!
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    31 Comments

      4.70 from 10 votes (10 ratings without comment)

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      Recipe Rating




    1. Lisa -

      December 30, 2022 at 4:41 pm

      This looks AMAZING! Can you use cauliflower rice in this recipe instead of fresh cauliflower?

      Reply
      • Sarah Menanix -

        January 03, 2023 at 2:23 pm

        Absolutely! If frozen, I would defrost it and then squeeze out any additional liquid in a towel first. If fresh, just use it as is!

        Reply
    2. Julie Stevenson -

      February 11, 2020 at 8:15 pm

      Wow, what a fabulous mac n cheese, full of flavour and veggies and so easy to nake as well as healthy, couldn’t ask for anything yummier! Thank you for an excellent recipe!

      Reply
    3. rwbqhinplf -

      February 01, 2020 at 1:27 pm

      rbizxcjqqonmctpmzkdswozvhnftqv

      Reply
    4. Emily R -

      November 08, 2019 at 9:16 pm

      This was yummy and easy to put together! I liked not having to make a roux. Vegetables are a welcome addition to mac and cheese. I used zucchini and cauliflower. It was nice to be able to grate everything in the food processor (zucchini, cauliflower, cheese). I also mixed together some smashed up rice chex (as an easy, cheap substitute for breadcrumbs), parmesan, butter, and a sprinkle of smoked paprika to put on top to give it some crunch. I made a 3/4 recipe as my pasta box was 340g instead of 1lb, but it filled my 9x13 dish. Thanks to you and your friend for the recipe!

      Reply
    5. Denise G -

      August 29, 2016 at 5:33 am

      Love these recipes. They make too much for one meal. I would enjoy them, but freezing in single servings in ziplock bags would be awesome. Cook one time, meals for several more days. I would love having a freezer full of healthy single meals to heat in my toaster oven.

      Reply
    6. Judy Toyota -

      July 12, 2016 at 3:47 pm

      Would this freeze well? I love this recipe

      Reply
      • Sarah Menanix -

        July 12, 2016 at 7:51 pm

        To be honest, I've never frozen it before! I think if you par baked it (like baked it only 50% of the way) and then froze it, it would work if you defrosted it in the oven to bake it the rest of the way!

        Reply
    7. Brooke -

      July 07, 2016 at 8:10 am

      Will the Veggies all melt down during baking? Or can you see them in the finished product? Debating if I should puree the Veggies, so they can't be seen by my kids. Looking forward to trying this recipe!

      Reply
      • Sarah Menanix -

        July 08, 2016 at 9:16 pm

        They don't melt, but they get so soft that you can't tell that they are there in the final product! The cauliflower looks a lot like the cottage cheese and if you use yellow squash, it looks just like cheese!

        Reply
    8. Trisha -

      May 06, 2015 at 12:30 pm

      It looks great but how many calories?

      Reply
    9. Heather K -

      April 18, 2015 at 6:15 pm

      This looks AMAZING! My four year old loves mac and cheese, so I am always looking for healthier versions of it.

      Reply
    10. Diane -

      October 19, 2014 at 5:27 pm

      Do you have to squeeze moisture from the squash?? This recipes looks fabulous!!

      Reply
      • Sarah Menanix -

        October 19, 2014 at 8:01 pm

        Thank you so much, Diane! Thanks for the question! This is my go-to recipe for mac & cheese and I've never had to squeeze moisture from the squash. Since the amount of zucchini is small in comparison to the whole dish, it doesn't turn out runny or soggy at all. I imagine if you used a squash like spaghetti squash you would want to remove some of the moisture, but for small zucchini and yellow squash, it's not necessary. Please let me know if you end up making it! :)

        Reply
    11. Denise -

      October 11, 2014 at 1:00 am

      This recipe looks delish but I can't stand cottage cheese taste and texture. What else could I substitute in its place? Could I use same amount greek yogurt or more sour cream and achieve same results? Thanks!

      Reply
      • Barbara -

        October 11, 2014 at 3:54 am

        Can sub Ricotta cheese.

        Reply
        • Sarah Menanix -

          October 12, 2014 at 4:53 pm

          Great question - thanks for that idea Barbara! I've been away from my computer so I'm sorry for the delay!

          I've never tried to used an alternative, but I would think greek yogurt would be a great substitute as it still has some of the tartness that you get from cottage cheese. I'll also mention you don't actually see/feel the texture or taste of the cottage cheese in this recipe because it's spread evenly throughout. It just adds a hint of tartness and moisture while being a bit healthier than sour cream.

          As Barbara said, ricotta would also be a great idea - especially since it's used in so many baked italian dishes.

          Let me know if you try a substitute and how it turns out! I hope you enjoy!

          Reply
    12. Deborah Peesker -

      October 09, 2014 at 4:47 pm

      sounds great I have been looking for a mac and cheese recipe

      Reply
      • Sarah Menanix -

        October 10, 2014 at 2:49 pm

        Thank you so much Deborah! I hope you like this one!

        Reply
    13. Thalia @ butter and brioche -

      July 08, 2014 at 11:58 pm

      never ever heard of quinoa macaroni before! definitely on the hunt to find some now. what a great recipe too - i will definitely be recreating the classic mac + cheese after reading this post. thanks!

      Reply
      • Sarah Menanix -

        July 09, 2014 at 12:02 am

        Thanks, Thalia! Definitely look for them - the Ancient Harvest brand is the best gluten-free pasta I've found...mimics the texture and flavor of regular pastas. Hope you enjoy this mac & cheese as much as we do!

        Reply
    14. STEPHANIE -

      July 08, 2014 at 9:33 am

      This looks amazing! Do you think greek yogurt could be used in place of the sour cream? Perhaps 2% would work?

      Reply
      • Sarah Menanix -

        July 08, 2014 at 9:39 am

        I've never tried that, but it sounds like a really good idea! Since greek yogurt is strained yogurt and won't separate in baking, I think a full-fat greek yogurt would totally work. Please let me know how it goes!

        Reply
    15. cynthia -

      July 07, 2014 at 2:53 pm

      Oh my god, this looks SO. GOOD. I'm always trying to find a way to justify my mac & cheese cravings and you've totally health-ified it a million times better than I ever could. Drooling.

      Reply
      • Sarah Menanix -

        July 07, 2014 at 5:01 pm

        Ha! That's my trick - throw in cauliflower and never feel guilty again;) Thanks for reading!

        Reply
    16. Sheri -

      July 06, 2014 at 2:35 pm

      I really want to make this!!! Sounds delicious!!

      Reply
      • Sarah Menanix -

        July 06, 2014 at 8:50 pm

        Thanks, mama!

        Reply
    17. Chris @ Shared Appetite -

      July 06, 2014 at 4:59 am

      This is amaazing! Love how you snuck in cauliflower, squash, and cottage cheese!! Pinning :) Glad you are having a fun getaway :)

      Reply
      • Sarah Menanix -

        July 06, 2014 at 8:50 pm

        You never know what you're actually eating at my house. You think you're eating something terrible for you? Don't worry, you'll get your full serving of veggies too;) I've come a long way from the little girl who hid her broccoli in her milk. so she wouldn't have to eat it...

        Reply
    18. Kelly -

      July 06, 2014 at 3:34 am

      Gurl, who knew? Cauliflower! I hope you are having a great holiday weekend!

      Reply
      • Sarah Menanix -

        July 06, 2014 at 8:49 pm

        Cauliflower is the newest hidden vegetable. Use it in pizza crust, as "rice" or even in alfredo! Dear cauliflower, we'll be best friends forever.

        Reply

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